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Pig Genome Newsletter #052
P I G G E N O M E U P D A T E
__________________________________________________________________
A Bimonthly Newsletter of the U.S. Pig Genome Coordination Program
************** No. 52 **************
* *
* <angenmap@db.genome.iastate.edu> *
* January 1, 2002 *
**************************************
+==========================================================================+
1. The 26th Annual Conference of the National Swine Improvement
Federation was held.
2. The swine workshop and PAGX in sunny San Diego.
3. New pig microsatellite diversity primers.
4. A new public porcine expressed sequence tagged (EST) database.
5. Upcoming meetings.
+==========================================================================+
The 26th annual conference of the National Swine Improvement
Federation was held December 6 and 7 in St. Louis. The conference was
attended by swine breeders, producers, scientists and company
personnel and featured an excellent line-up of speakers. The program
started with two talks on gene discovery, genomic tools, and their
use in selection programs, by Chris Tuggle (Iowa State University)
and Archie Clutter (Monsanto/ DeKalb Choice Genetics). This was
followed by a presentation by Rodney Goodwin (National Pork Board) on
genetic parameters of pork quality traits. The day ended with a
presentation by Jan Merks (Institute for Pig Genetics, the
Netherlands) on the impact of recent disease outbreaks on swine
breeding programs in the Netherlands. The second day featured talks
by Sam Buttram (Monsanto/DeKalb Choice Genetics) on strategies to
ensure high quality phenotypic data for selection programs, by Jan
Merks on transfer of genetic improvement from the nucleus to the
commercial level, and by Bill Muir (Purdue University) on the impact
of competition between group-housed animals on selection response and
selection strategies. Finally, Charles Farber (Michigan State
University), who was the winner of the 2001 NSIF Graduate Student
Award, presented a paper on representational difference analysis to
identify markers for candidate genes in the pig. The NSIF
Distinguished Service Award went to Dr. Maynard Hogberg (Michigan
State University). Congratulations to both these individuals. The
conference was complemented by a pre-conference tour of Monsanto, a
poster session, and a dinner at the President's Riverboat and Casino,
where some of the conference participants tried their luck at
alternative financial ventures. Congratulations to the organizers for
another excellent NSIF conference. Proceedings will be available
shortly at the NSIF site: http://mark.asci.ncsu.edu/NSIF/. Next year
the meeting will be back in Nashville (kindly provided by Jack
Dekkers).
It is not too late to attend the swine workshop and PAGX in sunny San
Diego. Please see www.intl-pag.org/pag for more information. As is
the usual case, the swine workshop will be meeting during Sunday,
January 13. Jon Beaver, chair, has planned interesting swine
sessions. The program will begin with station reports. The featured
speakers will be Denis Milan, INRA will present "Integration of
Genetic and RH Porcine Maps with Carthagene", Craig Beattie,
University of Nevada-Reno will present "Progress Towards a
Comprehensive Map for the Porcine Genome" Daniel Ciobanu, Iowa State
University will present "Discovery of New Genetic Markers Affecting
Meat Quality in Pigs" and Jack Dekkers, Iowa State University will
present "Mapping and Use of QTL for Marker-Assisted Improvement of
Meat Quality in Pigs". Your attendance is encouraged.
PAGX itself will have some excellent speakers and sessions. Dr.
Francis Collins, "Czar" of the Human Genome Program at NIH, has
agreed to give one of the plenary talks. Other speakers include
Ralph Greenspan on behavioral genetics, Tom Blumdell on structure and
function of the proteome, Steve Brown on ENU mutagenisis in mice and
Eric Green on comparative genome sequencing. Several changes are on
tap for next year. PAG-X will again be at the Town & Country
Convention Center in San Diego, CA, next year running from Sat., Jan.
12, through Wed., Jan. 16. The PAG-X meeting will include plant,
animal and agricultural microbe genomics all in one meeting. Also,
it is planned that a weekend-only registration rate ($175) is
available in addition to the usual student ($225), non-profit ($425
early/$525), and industry ($550 early/$650) for full week
registrations. Registration badges will be required to participate
in any workshop.
New pig microsatellite diversity primers are available. This set XI
of primers was made in response to requests and suggestions
concerning pig diversity research and selected from markers across
all 19 pig chromosomes. More information on all sets of primers can
be found at the web site:
http://www.genome.iastate.edu/resources/fprimerintr.html. In
addition, there are a limited number of bags of the previous set X of
primers still available. For further questions please contact me
(mfrothsc@iastate.edu) or Dr. Yuandan Zhang (ydzhang@iastate.edu). A
new public porcine expressed sequence tagged (EST) database, a set of
tools for EST analysis and a web query tool for public access to this
database has been developed. This database is comprised of a number
of tables covering the EST profile, alignment similarity (between pig
ESTs and human UniGene and between pig ESTs and pig genes/loci
sequences), human ortholog information on cytogenetic, linkage, and
RH locations. Interactive web query interfaces are developed for
public access to the EST database (http://pigest.genome.iastate.edu).
Based on the current work, public EST data is being analyzed and will
be added to generate a more diverse pig EST database. Good progress
has been made on the development of visualized web tools for
in-silico mapping of porcine ESTs on human chromosomes and for
predicating pig maps of the ESTs.
Upcoming meetings (for more details see:
http://www.genome.iastate.edu/community/meetings.html)
Plant and Animal Genome X Januay 12-16, 2002 at the Town and Country
Convention Center, San Diego, CA. For information please contact D.
Sherago, Sherago International at darrins@scherago.com.
Genomics and Structural Biology for Medicine, February 2-6, 2002,
Miami Beach, FL. See www.med.miami.edu/mnbws for more information.
International Society of Animal Genetics, Göttingen, Germany, August
11-15, 2002. See http://www.gwdg.de/~bbrenig/ISAG2002.html for
further information.
7th World Congress of Genetics Applied to Livestock Production,
August 19-23, 2002, Montpellier, France. See http://www.wcgalp.org
for more information.
Additional items can be found at:
http://www.agbiotechnet.com/calendar/index.asp.
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Items for Pig Genome Update 53 can be sent to me by no later than
February 10 please.
Max Rothschild
U.S. Pig Genome Coordinator
2255 Kildee Hall, Department of Animal Science
Iowa State University
Ames, Iowa 50011
Phone: 515-294-6202, Fax: 515-294-2401
mfrothsc@iastate.edu
cc: Dick Frahm, CSREES and Caird Rexroad II, ARS
+==========================================================================+
U.S. PIG GENOME COORDINATION PROJECT
+-----------------------------------+
| Paid for by funds from the NRSP-8 | Web: http://www.genome.iastate.edu
| USDA/CSREES sponsored Pig Genome | Mailing list:
| Coordination Program | angenmap@db.genome.iastate.edu
+-----------------------------------+
+==========================================================================+
