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Pig Genome Newsletter #039
P I G G E N O M E U P D A T E
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A Bimonthly Newsletter of the U.S. Pig Genome Coordination Program
************** No. 39 **************
* *
* <angenmap@db.genome.iastate.edu> *
* November 1, 1999 *
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1. Workshop on Plant and Animal Bioinformatics Met in Washington
2. Stakeholder Meeting on Agricultural Genomics Held in Washington, DC
3. International Symposium on Animal Breeding and Genetics Held at
The Universidade Federal de Vicosa
4. Competitive Grant Program Updated
5. A RPCI-44 Male Porcine BAC Library Has Been Constructed
6. Reminder: Set VIII Fluorescent Primers for Distribution
7. PAG-VIII and the NAGRP 2000 Meetings Are Coming
8. Upcoming Meetings (3 Items)
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The US-European Community Task Force on Biotechnology sponsored workshop
on Plant and Animal Bioinformatics met in Washington on September 13-14.
The meeting was developed to review lessons learned and discuss new
directions and emerging initiatives. Those participating from the animal
side included Drs. Caird Rexroad, John Keele and Steve Kappes, USDA, Max
Rothschild, ISU and Andre Eggen INRA, France. A large group of well known
plant genomics people also attended from Europe and the US and represented
private and public issues. While good progress has been made, points of
concern were raised from several people on the need for continued
collaboration, funding, training and the technical challenges that face
us all. Specific recommendations included suggestions on ways to secure
funding for collaborative visits, training of scientists and students and
support of bioinformatics research.
o o o o o o o o o o o
An important stakeholder meeting on agricultural genomics held in
Washington, DC on Friday, September 24, 1999. Drs. Caird Rexroad and
Colin Scanes organized this meeting with support from individuals from
the Experiment Stations, ARS, CSREES and college deans (including Drs.
Nancy Cox, Dan Laster, David MacKenzie, Terry Nipp, Eugene Sander, Larry
Schook, Randy Woodson, Johnny Wynne and R. Michael Roberts). An
initial overview was presented by Dr. Eileen Kennedy, USDA. This was
followed by a section entitled Genomics for the Competitive &
Profitability of US Agriculture in which an overview was given by Dr.
Floyd Horn, ARS. Other speakers in this section included Dr. Mary Cl
utter, NSF, Dr. David MacKenzie, NE Region, Dr. Jim Womack, Texas A&M,
Dr. Mark Trusheim, Monsanto and Dr. Kellye Eversole, NCGA. The next
section was devoted to Genomics for Food Safety and Environmental
Quality and included an overview by Dr. Dan Laster, USDA-ARS, MARC and
other talks by Dr. Bonnie Buntain, USDA, Dr. Chuck Schoder, NCBA and
Dr. Clair Fraser, TIGR. A final section was devoted to Funding of
Agricultural Genomics and included presentations by Dr. Roger Wyse,
Burrill & Co., Dr. Richard Lower, ESCOP, Dr. Cliff Gabriel, OSTP and
discussion by Dr. Maureen Kelly, USB and Beth Lautner, NPPC. Dr. Mike
Roberts, CSREES/USDA provided a final wrap-up. It is hoped that this
meeting may set the stage for increases in funding for agricultural
genomics. The particular needs are for a three-pronged agricultural
genomics initiative in the area of plants, livestock and microbial
genomics. The rational for these include: 1) Producer profitability/
national competitiveness, 2) Food safety and 3) Environmental stewardship.
It is obvious that the understanding lives tock genomes will be aided by
the rapid progress in sequencing the human genome. The bringing together
of a strong group of stakeholders related to animal, plants and microbes
is seen as a needed to develop a broad coalition of support and to press
for an agricultural genome initiative. The organizers were pleasantly
satisfied with the progress of the meeting and look for things to move
forward. (kindly provided by Dr. Colin Scanes).
o o o o o o o o o o o
The Universidade Federal de Vicosa recently hosted an International
Symposium on Animal Breeding and Genetics. The meeting was held September
21-24 and was an excellent mixture of quantitative and molecular papers.
US speakers included Drs. Archie Clutter, Max Rothschild, Bill Muir,
Ignacy Miztal, Dan Gianola, Rohan Fernando and Dick Quaas. The meeting
included many excellent Brazilian and international speakers and the
proceedings from the meeting are very complete and useful. Our hosts put
on an excellent meeting and their hospitality was superb.
o o o o o o o o o o o
Competitive grant program updated. As most people know, the Federal
Government is presently working temporarily via a "Continuing Resolution"
while Congress and the Administration try to work out details of the budget
that was supposed to be passed by October 1. If and when that occurs,
there is hope that the USDA National Research Initiative-Competitive
Grants Program (NRI) budget will be approved at last year's $119M level.
This is much below the President's initial request of $200M, but $14M above
the reduced budget initially included in the House version of the Ag
Appropriations Bill. The final outcome for next year remains uncertain.
Meanwhile, the announcement of the 2000 USDA NRI Grants Program has been
posted at http://www.reeusda.gov/nri/ and the deadline for the Animal
Genome and Genetic Mechanisms panel is Feb. 15, 2000. Swine geneticists
are strongly encouraged to apply!! Note that the Animal Genome Basic
Reagents and Tools special program is included again in this year's program.
This program accepts proposals (up to $1 million in total costs) that will
provide critical shared animal genome reagents to facilitate research
progress in this area. Five such grants were awarded this past year
involving resources such as new microsatellites, BAC libraries, physical
and comparative maps, and EST (expressed sequence tags 3D sequenced cDNA
library sets) banks. This years92 grantees recently met in Washington so
that the NRI could review their plans and provide consultation. The NRI
Program officials (e.g., Chief Scientist, Michael Roberts and his soon-to-be
successor) will monitor the progress of these programs carefully and insure
the public availability of the resources generated. (kindly provided by
Jerry Dodgson)
o o o o o o o o o o o
More new tools! A RPCI-44 Male Porcine BAC Library has been constructed
by the BACPAC Resource Center in the Department of Cancer Genetics at
Roswell Park Cancer Institute in Buffalo, New York, USA. See previous
Pig Genome Update 38. As part of the Pig Genome Coordination effort,
up to $650 will be supplied to US laboratories interested in obtaining
the filter sets. This will pay for approximately 50% of the filters.
Prior to taking advantage of this offer, please contact me at
mfrothsc@iastate.edu to confirm availability of funds.
o o o o o o o o o o o
If you haven't heard, additional fluorescent primers are ready to distribute.
A set of 73 pairs of fluorescent primers (Set VIII; April 1999) is available
for distribution. This brings the total number of fluorescent primer pairs
distributed by the U.S. Pig Genome Coordinator to 377 pairs. Primer
information is at: http://www.genome.iastate.edu/resources/fprimerintr.html.
To order Set VIII fluorescent primers, please send your request, along with
your detailed postal address and your daytime phone number (required), to
mfrothsc@iastate.edu. Please continue to make use of them and also be sure
to acknowledge their source as it helps to improve cooperation and
coordination activities. Please also send requests of primers for genome
scans to M. Rothschild so that the next set can include suggestions from
the pig genome community.
o o o o o o o o o o o
Plant & Animal Genome VIII (PAG-VIII) and the NAGRP 2000 meetings are coming!
Most of you will have received registration information for PAG-VIII, but,
if not, it can be viewed by clicking on the PAG-VIII title at the conference
Web site, http://www.intl-pag.org/. Abstracts were to be submitted on line
at this address by Oct. 15. Registration can also be completed on-line or
using a form obtained at the site. The registration fee is $375 for those
from non-profit institutions, if postmarked by Nov. 5; $475, thereafter
($100 more for participants from industry.) This year the swine committee
gets an early start on Sunday, January 9 with an 8:30 a.m. session and
continuing all day until 5:30 p.m. Numerous other workshops will run
concurrently on Sunday, with the PAG talks and workshops running Monday
through Wednesday, culminating with Wednesday night's banquet. For those
interested in infectious diseases, PAG-VIII will be followed directly by
the first Ag Microbial Genome meeting; see the same web site for details.
Limited travel support for NAGRP members is available: contact me at
mfrothsc@iastate.edu, if interested. Graduate students may compete for a
Neal Jorgensen Travel Award of $300 plus complementary registration; see
http://www.intl-pag.org/ or contact me before Nov. 15.
o o o o o o o o o o o
Upcoming meetings:
Physiological Genomics and Rat Models, Dec. 9-12, 1999, Cold Spring
Harbor Laboratory, N.Y. Contact info: http://www.cshl.org/meetings.
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Plant and Animal Genome VIII, joint with the NAGRP annual meetings, Jan.
8-13, 2000, Town & Country Convention Center, San Diego, CA. See:
http://www.intl-pag.org. Followed immediately by Ag Microbial Genome I,
Jan. 13-14, same location. See http://www.ag-microbial.org/agm.
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International Society of Animal Genetics: Minneapolis, MN, USA will be
held July 24-27, 2000. Contact Brian Kirkpatrick at
bwkirkpat@facstaff.wisc.edu.
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Contributions to Pig Genome Update 40 including short meeting announcements
are always welcome. Please send by December 10.
Max Rothschild
U.S. Pig Genome Coordinator
2255 Kildee Hall, Department of Animal Science
Iowa State University
Ames, Iowa 50011
Phone: 515-294-6202, Fax: 515-294-2401
mfrothsc@iastate.edu
cc: Dick Frahm, CSREES and Caird Rexroad II, ARS
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U.S. PIG GENOME COORDINATION PROJECT
+-----------------------------------+
| Paid for by funds from the NRSP-8 | Web: http://www.genome.iastate.edu
| USDA/CSREES sponsored Pig Genome | Mailing list:
| Coordination Program | angenmap@db.genome.iastate.edu
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